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@bioFAM

bioFAM

Our group develops and applies computational approaches to study molecular variations and their phenotypic consequence. We are part of DKFZ and EMBL.

Popular repositories Loading

  1. MOFA2 MOFA2 Public

    Multi-Omics Factor Analysis

    R 364 62

  2. MOFA MOFA Public

    Multi-Omics Factor Analysis

    R 253 67

  3. mofapy2 mofapy2 Public

    Multi-omics factor analysis v2

    Python 54 28

  4. mofax mofax Public

    Work with trained factor models in Python

    Jupyter Notebook 36 15

  5. mofaflex mofaflex Public

    factor models for omics data

    Python 30 1

  6. slalom slalom Public

    Jupyter Notebook 29 10

Repositories

Showing 10 of 16 repositories
  • mofaflex Public

    factor models for omics data

    bioFAM/mofaflex’s past year of commit activity
    Python 30 BSD-3-Clause 1 4 0 Updated Dec 17, 2025
  • MOFA2 Public

    Multi-Omics Factor Analysis

    bioFAM/MOFA2’s past year of commit activity
    R 364 LGPL-3.0 62 78 3 Updated Dec 17, 2025
  • mofaflex-analysis Public

    Analyses, benchmarks and tutorials related to the Prismo project

    bioFAM/mofaflex-analysis’s past year of commit activity
    Jupyter Notebook 3 0 2 0 Updated Nov 25, 2025
  • mofapy2 Public

    Multi-omics factor analysis v2

    bioFAM/mofapy2’s past year of commit activity
    Python 54 LGPL-3.0 28 6 0 Updated Oct 24, 2025
  • scDoRI Public

    scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (eGRNs) from single-cell multiome data (RNA + ATAC).

    bioFAM/scDoRI’s past year of commit activity
    Python 29 MIT 7 2 4 Updated Aug 20, 2025
  • mofax Public

    Work with trained factor models in Python

    bioFAM/mofax’s past year of commit activity
    Jupyter Notebook 36 MIT 15 3 6 Updated Oct 22, 2024
  • cellij Public

    Implementation of a Modular Multi-Omics Factor Model Framework

    bioFAM/cellij’s past year of commit activity
    Python 5 BSD-3-Clause 0 13 3 Updated Oct 19, 2023
  • cellij-notebooks Public
    bioFAM/cellij-notebooks’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 0 0 0 Updated Sep 15, 2023
  • MOFAdata Public

    Data for Multi-Omics Factor Analysis (MOFA)

    bioFAM/MOFAdata’s past year of commit activity
    R 2 2 1 0 Updated Jun 9, 2023
  • FISHFactor Public

    A probabilistic factor model for spatial transcriptomics data with subcellular resolution

    bioFAM/FISHFactor’s past year of commit activity
    Jupyter Notebook 24 LGPL-3.0 0 0 0 Updated May 3, 2023
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