Welcome to the GitHub of PERSIMUNE! It hosts various research projects, code repositories, and resources related to our ongoing research efforts.

As a part of maintaining a well-organized and easily navigable GitHub repository space, we have established the following naming protocol for each repository:

1. Major Standalone Projects: For any significant standalone project, there are no strict naming restrictions. You are free to choose a descriptive name that reflects the essence of the project.

2. Code Supporting Publications: If the repository contains code that directly supports a single publication, please follow the provided naming templates based on the type of code.

For code repositories that serve to support a single publication, we use the following naming conventions:

For code that deploys a web application associated with a publication, use the following naming template:

PAW[YYYY][Surname]__[TITLE]

• PAW: Abbreviation for "Paper Associated Webapp."
• YYYY: The year of the expected publication.
• Surname: The last name of the first author of the publication.
• TITLE: A short descriptive title with words separated by single underscores "_".

Example: PAW2023Doe__Sentiment_Analysis_WebApp

For code that is not a web application but is associated with a publication, use the following naming template:

PAC[YYYY][Surname]__[TITLE]

• PAC: Abbreviation for "Paper Associated Code."
• YYYY: The year of the expected publication.
• Surname: The last name of the first author of the publication.
• TITLE: A short descriptive title with words separated by single underscores "_".

Example: PAC2023Smith__Data_Preprocessing_Utils

Centre for Personalised Medicine of Infectious Complications in Immune Deficiency (PERSIMUNE) funded by Danish National Research Foundation is dedicated to pushing the boundaries of knowledge in various areas of infectious diseases including pattern recognition from big data from routine care, studies of host and microbial genetics, imaging, and immunological characterization. Our researchers and scholars engage in cutting-edge research, addressing some of the most pressing challenges facing society today. Through interdisciplinary collaboration and innovation, we strive to make meaningful contributions.