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Cloufield/README.md

Hello! I am He Yunye, a Research Associate in the Laboratory of Complex Trait Genomics at the University of Tokyo.

Python packages:

  • gwaslab: A Python package for GWAS summary statistics (sumstats) QC, standardization, and harmonization, with visualization tools including Manhattan and Q–Q plots.
  • sumstats-liftover: A fast, lightweight Python package to lift over GWAS summary statistics between genome builds (e.g., GRCh37 ↔ GRCh38), designed for scalable sumstats coordinate conversion workflows.
  • formatbook: A companion repository for gwaslab, collecting commonly used GWAS sumstats formats for header conversion.

Github pages:

  • CTGCatalog: A curated collection of commonly used resources in Complex Trait Genetics.
  • GWASTutorial: A beginner-friendly GWAS tutorial.

Pinned Loading

  1. gwaslab gwaslab Public

    A Python package for handling and visualizing GWAS summary statistics. https://cloufield.github.io/gwaslab/

    Python 266 36

  2. GWASTutorial GWASTutorial Public

    GWAS Tutorial for Beginners

    Jupyter Notebook 352 90

  3. CTGCatalog CTGCatalog Public

    A collection of commonly used resources for complex trait genetics.

    Python 35 7

  4. sumstats-liftover sumstats-liftover Public

    Fast chain-based liftover for pandas DataFrames

    Python 1